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Sequence: ACGG
Retrieve MetaTrajectory
Click on Id to open Simulation Metadata and Analyses
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
NAFlex_hybrid
NONE
Rna
A
parmBSC0
TIP3P
Hybrid-A Duplex Naked ParmBSC0 TIP3P Electroneutral
1,037
CTAC
ACGG
NAFlex_437d
437D
Rna
A
parmBSC0
TIP3P
RNA-A Single Stranded Naked ParmBSC0 TIP3P Electroneutral Pseudoknot Flipout-bases Overhanging-bases Loops
1,015
GGCGCGGCACCGUCCGCGGAACAA
ACGG
NAFlex_lks3
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
1,000
C
ACGG
AACCGGTTCCGTG
NAFlex_1g14
1G14
Dna
B
parm99
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
1,000
GGCAAGAA
ACGG
NAFlex_muCGGA
NONE
Dna
B
parmBSC0
SPCE
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt
1,000
GCG
ACGG
ACGG
ACGG
AGC
NAFlex_miniABC_NaK_13
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50%
1,000
GCTTGTG
ACGG
CTAGGGC
NAFlex_miniABC_K_13
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl
1,000
GCTTGTG
ACGG
CTAGGGC
NAFlex_miniABC_Na_13
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl
1,000
GCTTGTG
ACGG
CTAGGGC
NAFlex_RNA_miniABC_KCl_13
NONE
Rna
A
parmBSC0+OL3
TIP3P
RNA-A Duplex Naked TIP3P AddedSalt
1,000
GCUUGUG
ACGG
CUAGGGC
NAFlex_56merTIP3P
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
500
CGCGATTGCCTA
ACGG
ACAGGCATAGACGTCTATGCCTGTCCGTTAGGCAATCGCG
NAFlex_AAf
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ModifiedNucleotides ParmBSC1 TIP3P Electroneutral
500
CCATACAAT
ACGG
NAFlex_GGf
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ModifiedNucleotides ParmBSC1 TIP3P Electroneutral
500
CCATACGAT
ACGG
NAFlex_56merSPCE
NONE
Dna
B
parmBSC1
SPCE
DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral
290
CGCGATTGCCTA
ACGG
ACAGGCATAGACGTCTATGCCTGTCCGTTAGGCAATCGCG
NAFlex_rna3
NONE
Rna
A
parmBSC0
TIP3P
RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral
202
C
ACGG
AACCGGUUCCGUC
NAFlex_1fzx
1FZX
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral A-track
200
GGCAAAAA
ACGG
NAFlex_CG_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGC
ACGG
CTTAAACCGACGTACGCGCGGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_v100t9
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGTT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106Bt10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
TGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGATATCTT
NAFlex_v106Ct10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
GAGGATATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGT
NAFlex_v106R2t10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106R3t10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t9
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
50
ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATT
ACGG
GGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT