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Sequence: ACGT
Retrieve MetaTrajectory
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Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
NAFlex_ProtDNA_4oi7
4OI7
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
2,000
C
ACGT
TCGTAGCATCGTTGCAG
NAFlex_ProtDNA_1a0a
1A0A
Prot-Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
2,000
CTAGTCCC
ACGT
GTGAG
NAFlex_2dgc
2DGC
Prot-Dna
B
parmBSC1
SPCE
DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt Protein-nuc
1,000
GGAGATG
ACGT
CATCTCC
NAFlex_muCGTA
NONE
Dna
B
parmBSC0
SPCE
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt
1,000
GCT
ACGT
ACGT
ACGT
AGC
NAFlex_miniABC_K_1
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl
1,000
GCA
ACGT
GCTATGGAAGC
NAFlex_miniABC_Na_1
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl
1,000
GCA
ACGT
GCTATGGAAGC
NAFlex_miniABC_NaK_1
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50%
1,000
GCA
ACGT
GCTATGGAAGC
NAFlex_56merTIP3P
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
500
CGCGATTGCCTAACGGACAGGCATAG
ACGT
CTATGCCTGTCCGTTAGGCAATCGCG
NAFlex_ACGT
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
500
CGCG
ACGT
CGCG
NAFlex_56merSPCE
NONE
Dna
B
parmBSC1
SPCE
DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral
290
CGCGATTGCCTAACGGACAGGCATAG
ACGT
CTATGCCTGTCCGTTAGGCAATCGCG
NAFlex_CG_OG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCXAACGCACGCXCGCGCTGTCCXCCGCGTTTCXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_OG2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACXGCTTAAACCX
ACGT
ACGCGCXGTCCCCCGCXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_5hmC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_5hmC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXG
ACGT
ACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_5mC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_5mC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXG
ACGT
ACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCGAACGCACGCGCGCGCTGTCCGCCGCGTTTCGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_CG_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACGGCTTAAACCG
ACGT
ACGCGCGGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_DZ1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_DZ2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXT
ACGT
AC
NAFlex_TT_PP1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_PP2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXX
ACGT
ACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_SSB1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_SSB2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXT
ACGT
ACGCGXTGTCCCCCGXTTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_TG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_TT1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_TT2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXX
ACGT
ACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGC
ACGT
GTCAGATATATACATC
NAFlex_TT_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXT
ACGT
AC