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Sequence: CCGC
Retrieve MetaTrajectory
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Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
NAFlex_2mhi
2MHI
Rna
A
parmBSC0
TIP3P
RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral Telomerase
1,027
GGAAACG
CCGC
GGUCAGCUCGGCUGCUGCGAAGAGUUCGUCUCUGUUGUUUCC
NAFlex_437d
437D
Rna
A
parmBSC0
TIP3P
RNA-A Single Stranded Naked ParmBSC0 TIP3P Electroneutral Pseudoknot Flipout-bases Overhanging-bases Loops
1,015
GGCGCGGCACCGU
CCGC
GGAACAAACGG
NAFlex_muCGCG
NONE
Dna
B
parmBSC0
SPCE
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt
1,000
G
CCGC
GCGCGCGCGCGGC
NAFlex_56merL
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGCCGGCAGTAGCCGAAAAAATAGGCGCGCGCTCAAAAAAATGCCCCATG
CCGC
GC
NAFlex_CTAG_8
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGGGGCTAGCC
CCGC
NAFlex_56merB
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
440
CGCCGGCAGTAGCCGAAAAAATAGGCGCGCGCTCAAAAAAATGCCCCATG
CCGC
GC
NAFlex_56merA
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
360
CGCCGGCAGTAGCCGAAAAAATAGGCGCGCGCTCAAAAAAATGCCCCATG
CCGC
GC
NAFlex_CG_OG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TCXAACGCACGCXCGCGCTGTCCX
CCGC
GTTTCXA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_OG2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCACXGCTTAAACCXACGTACGCGCXGTCCC
CCGC
XTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXGAACGCACGXGCGCGCTGTCXG
CCGC
GTTTXGA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXGAACGCACGXGCGCGCTGTCXG
CCGC
GTTTXGA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TCGAACGCACGCGCGCGCTGT
CCGC
CGCGTTTCGA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCACGGCTTAAACCGACGTACGCGCGGTCCC
CCGC
GTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXTAACGCACGXTCGCGCTGTCXT
CCGC
GTTTXTA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXTACGTAC
NAFlex_TT_PP1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXXAACGCACGXXCGCGCTGTCXX
CCGC
GTTTXXA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_PP2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXTAACGCACGXTCGCGCTGTCXT
CCGC
GTTTXTA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXTACGTACGCGXTGTCCCCCGXTTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXTAACGCACGXTCGCGCTGTCXT
CCGC
GTTTXTA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXXAACGCACGXXCGCGCTGTCXX
CCGC
GTTTXXA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCA
CCGC
TXTAACGCACGXTCGCGCTGTCXT
CCGC
GTTTXTA
CCGC
CAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGG
CCGC
TCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXTACGTAC
NAFlex_TF_2ac0_2_wholeA
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
CXGGCATGC
CCGC
NAFlex_TF_2ac0_2_wholeB
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
CXGGCATGC
CCGC
NAFlex_TF_2ac0_3_wholeA
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
CGXGCATGC
CCGC
NAFlex_TF_2ac0_3_wholeB
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
CGXGCATGC
CCGC
NAFlex_TF_2ac0_4_wholeA
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
CGGXCATGC
CCGC
NAFlex_TF_2ac0_4_wholeB
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
CGGXCATGC
CCGC