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Sequence: CTAG
Retrieve MetaTrajectory
Click on Id to open Simulation Metadata and Analyses
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
NAFlex_ProtDNA_1a0a
1A0A
Prot-Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
2,000
CTAG
TCCCACGTGTGAG
NAFlex_1tro
1TRO
Prot-Dna
B
parmBSC1
SPCE
DNA-B Duplex Complex ParmBSC1 SPC/E AddedSalt Prot-nuc Overhanging-bases
1,000
GTA
CTAG
TTAA
CTAG
TAC
NAFlex_AGCT
NONE
Dna
B
parmBSC1
SPCE
DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt
1,000
GC
CTAG
CTAG
CTAG
CTGC
NAFlex_lks2
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
1,000
CTAG
GTGGATGACTCATT
NAFlex_muAGCT
NONE
Dna
B
parmBSC0
SPCE
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt
1,000
GC
CTAG
CTAG
CTAG
CTGC
NAFlex_muGATA
NONE
Dna
B
parmBSC0
SPCE
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt
1,000
G
CTAG
ATAGATAGATAGC
NAFlex_miniABC_NaK_13
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50%
1,000
GCTTGTGACGG
CTAG
GGC
NAFlex_miniABC_K_13
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl
1,000
GCTTGTGACGG
CTAG
GGC
NAFlex_miniABC_Na_13
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl
1,000
GCTTGTGACGG
CTAG
GGC
NAFlex_CTAG_1
NONE
Dna
B
parmBSC1
SPCE
DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt
500
CGTCGG
CTAG
CCGAGC
NAFlex_CTAG_10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGCGCG
CTAG
CGCGGC
NAFlex_CTAG_11
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTA
CTAG
AGAGGC
NAFlex_CTAG_12
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTA
CTAG
CGAGGC
NAFlex_CTAG_13
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTA
CTAG
GGAGGC
NAFlex_CTAG_15
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTC
CTAG
AGAGGC
NAFlex_CTAG_16
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTC
CTAG
CGAGGC
NAFlex_CTAG_17
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTC
CTAG
GGAGGC
NAFlex_CTAG_18
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTG
CTAG
AGAGGC
NAFlex_CTAG_19
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTG
CTAG
CGAGGC
NAFlex_CTAG_2
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTC
CTAG
GAGAGC
NAFlex_CTAG_20
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTT
CTAG
AGAGGC
NAFlex_CTAG_21
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGA
CTAG
ACTCGC
NAFlex_CTAG_22
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGA
CTAG
CCTCGC
NAFlex_CTAG_23
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGA
CTAG
GCTCGC
NAFlex_CTAG_24
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGA
CTAG
TCTCGC
NAFlex_CTAG_25
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGC
CTAG
ACTCGC
NAFlex_CTAG_26
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGC
CTAG
CCTCGC
NAFlex_CTAG_27
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGC
CTAG
GCTCGC
NAFlex_CTAG_28
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGG
CTAG
ACTCGC
NAFlex_CTAG_29
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGG
CTAG
CCTCGC
NAFlex_CTAG_3
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGAAAA
CTAG
AAAAGC
NAFlex_CTAG_30
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGAGT
CTAG
ACTCGC
NAFlex_CTAG_31
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CG
CTAG
CTAG
CTAG
GC
NAFlex_CTAG_32
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CG
CTAG
CTAG
CTAG
GC
NAFlex_CTAG_4
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGAAAA
CTAG
TTTTGC
NAFlex_CTAG_5
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGATAT
CTAG
ATATGC
NAFlex_CTAG_6
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTATA
CTAG
TATAGC
NAFlex_CTAG_7
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGGGG
CTAG
GGGGGC
NAFlex_CTAG_8
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGGGG
CTAG
CCCCGC
NAFlex_CTAG_9
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGGCGC
CTAG
GCGCGC
NAFlex_CTAG_flex
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGCTCT
CTAG
AGAGGC
NAFlex_CTAG_rig
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGCAAG
CTAG
CTTGGC
NAFlex_CTAG_14
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt
500
CGTCTA
CTAG
TGAGGC
NAFlex_CG_OG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTCXAACGCACGCXCGCGCTGTCCXCCGCGTTTCXACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_OG2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACXGCTTAAACCXACGTACGCGCXGTCCCCCGCXTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTCGAACGCACGCGCGCGCTGTCCGCCGCGTTTCGACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACGGCTTAAACCGACGTACGCGCGGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXTGCTTAAACXTACGTAC
NAFlex_TT_PP1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_PP2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXTGCTTAAACXTACGTACGCGXTGTCCCCCGXTTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCC
CTAG
TCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
CTAG
CAXTGCTTAAACXTACGTAC