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Sequence: TCGT
Retrieve MetaTrajectory
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Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
NAFlex_ProtDNA_4oi7
4OI7
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
2,000
CACGT
TCGT
AGCA
TCGT
TGCAG
NAFlex_36merSPCE
NONE
Dna
B
parmBSC1
SPCE
DNA-B Duplex Naked ParmBSC1 SPC/E Electroneutral
300
CGCGATTGCCTAACGAGTAC
TCGT
TAGGCAATCGCG
NAFlex_36merTIP3P
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
300
CGCGATTGCCTAACGAGTAC
TCGT
TAGGCAATCGCG
NAFlex_CG_OG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTCXAACGCACGCXCGCGCTGTCCXCCGCGTTTCXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_OG2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACXGCTTAAACCXACGTACGCGCXGTCCCCCGCXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTCGAACGCACGCGCGCGCTGTCCGCCGCGTTTCGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACGGCTTAAACCGACGTACGCGCGGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXTGCTTAAACXTACGTAC
NAFlex_TT_PP1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_PP2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXTGCTTAAACXTACGTACGCGXTGTCCCCCGXTTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TG1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch2
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGG
TCGT
AGACAGCTCTAGCAXTGCTTAAACXTACGTAC
NAFlex_TF_1hlv_16_dna_wholeA
-
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCXGGATT
NAFlex_TF_1hlv_16_dna_wholeB
-
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCXGGATT
NAFlex_TF_1hlv_17_dna_wholeA
-
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGXGATT
NAFlex_TF_1hlv_17_dna_wholeB
-
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGXGATT
NAFlex_TF_1hlv_18_dna_wholeA
-
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGGXATT
NAFlex_TF_1hlv_18_dna_wholeB
-
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGGXATT
NAFlex_TF_1hlv_16_wholeA
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCXGGATT
NAFlex_TF_1hlv_16_wholeB
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCXGGATT
NAFlex_TF_1hlv_17_wholeA
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGXGATT
NAFlex_TF_1hlv_17_wholeB
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGXGATT
NAFlex_TF_1hlv_18_wholeA
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGGXATT
NAFlex_TF_1hlv_18_wholeB
-
Prot
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
GCCT
TCGT
TGGATGCGGXATT
NAFlex_v100t9
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTA
TCGT
TACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT